Algorithmic Challenges in Genomics Boot Camp

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source: Simons Institute      2016年1月25日
Algorithmic Challenges in Genomics Boot Camp Jan. 19 – Jan. 22, 2016
The Boot Camp is intended to acquaint program participants with the key themes of the program.
Fundamentals of Stringology
Dan Gusfield (UC Davis) and Mike Waterman (University of Southern California)
Fundamental Algorithms in Deep Sequencing
Pavel Pevzner (UC San Diego), Lior Pachter (UC Berkeley) and Noah M. Daniels (MIT)
Introduction to Cancer Bioinformatics
Ben Raphael (Brown University) and Niko Beerenwinkel (ETH Zürich)
Introduction to Regulatory Genomics and Epigenomics
Uwe Ohler (MDC Berlin), Yaron Orenstein (MIT) and Nadav Ahituv (UCSF)
Introduction to Biological Network Analysis
Roded Sharan (Tel Aviv University) and Donna Slonim (Tufts University)
For more information, please visit https://simons.berkeley.edu/workshops/genomics2016-boot-camp.
These presentations were supported in part by an award from the Simons Foundation.

Fundamentals of Stringology I: Recap on Exact Pattern Matching and Alignment Algorithms 1:00:38 Dan Gusfield, UC Davis https://simons.berkeley.edu/talks/dan...
Fundamentals of Stringology II: Probability and Statistics for Sequence Alignment 51:41
Fundamentals of Stringology III: Suffix Tress and Suffix Arrays 1:00:42
Fundamentals of Stringology IV: The Burrows-Wheeler Transform 1:07:00
Fundamental Algorithms in Deep Sequencing I: Assembly 1:04:38
Fundamental Algorithms in Deep Sequencing II: Mapping/Alignment 1:19:56
Fundamental Algorithms in Deep Sequencing III: Genomic Compression: Storage, Transmission, and ... 1:29:23
Introduction to Cancer Bioinformatics I: Inferring Genomic Variation from Tumor Sequencing Data 1:31:25
Introduction to Cancer Bioinformatics II: Tumor Phylogeny 1:03:21
Introduction to Cancer Bioinformatics III: Cancer Progression Networks 56:02
Introduction to Regulatory Genomics and Epigenomics I: Intro to the Biology of Gene Regulation 1:13:15
Introduction to Regulatory Genomics and Epigenomics II: Motif Finding 1:20:22
Introduction to Regulatory Genomics and Epigenomics III: Hidden Markov Models in Gene Regulation 1:38:26
Introduction to Biological Network Analysis I: Network Basics and Properties 57:31
Introduction to Biological Network Analysis II: Protein-Protein Interaction Networks: From Graphs to 1:07:13
Introduction to Biological Network Analysis III: Identifying Network Modules 1:06:20
Introduction to Biological Network Analysis IV: Network Alignment and Querying 49:11