Quantitative Systems Biology (2015, ICTS Bangalore)

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source: International Centre for Theoretical Sciences    2016年2月15日
Winter School on Quantitative Systems Biology 2015
PROGRAM URL:
http://www.icts.res.in/program/qsb2015
DATES: Saturday 05 Dec, 2015 - Saturday 19 Dec, 2015
VENUE : Ramanujan Lecture Hall, ICTS Bangalore

DESCRIPTION:
The International Centre for Theoretical Sciences (ICTS) and the Abdus Salam International Centre for Theoretical Physics (ICTP), are organizing a Winter School on Quantitative Systems Biology from 8 to 19 December 2015 (QSB2015), as part of the ICTP- ICTS Programme in Biology. This is the fourth school in the series on Quantitative Systems Biology, held alternately at Trieste and Bangalore. QSB2015 will be hosted in the ICTS campus in Bangalore.
The School is targeted towards young researchers, particularly those at the PhD and post -doctoral level with backgrounds in the physical and mathematical sciences and engineering, who are working in biology or hope to do so. It will give participants a broad introduction to open problems in modern biology, and provide pedagogical instruction on new quantitative approaches being used to address those problems. The main school will be preceded by an intensive three-day pre-school (5-7 December, 2015) targeted to non-biologists.
QSB2015 is centered around bacteria, the simplest known forms of life. The focus is on the basics of cellular life and the principles thereof. The emphasis is on the structures and processes that allow bacteria to survive, reproduce, evolve and form communities in their environment. This is a setting that is fertile for quantitative work, both theoretical and experimental, and for grasping some universals in biology. Lecture courses on different topics are envisaged for the school by an array of distinguished lecturers. The courses will provide an intensive background to the specific topics before turning towards cutting edge research.

Subjects include
Bacterial cell physiology and growth
Metabolism, regulation and response to the environment
Structure and dynamics of biochemical networks
Bacterial ecology
Evolution
Energy, information and computation in cells
ORGANIZING COMMITTEE
Antonio Celani (ICTP)
Sanjay Jain (Delhi)
Sandeep Krishna (NCBS)
Vijay Krishnamurthy (ICTS)
Pankaj Mehta (Boston)
Matthew Scott (Waterloo)
SCIENTIFIC ADVISORY COMMITTEE
Vijay Balasubramanian (UPenn)
Nagasuma Chandra (IISc)
Matteo Marsili (ICTP)
Anirvan Sengupta (Rutgers)
Mukund Thattai (NCBS)
Michele Vendruscolo (Cambridge)
SPEAKERS:
LECTURE COURSES:
1.Mathias Heinemann (Groningen)
2.Suckjoon Jun (UCSD)
3.Tom Kuhlman (UIUC)
4.Pankaj Mehta (Boston)
5.Yitzhak Pilpel (Weizmann)
6.Nathan Price (ISB Seattle)
7.Matthew Scott (Waterloo)
8.Gary Stormo (Washington)
RESEARCH TALKS:
1.Nagasuma Chandra (IISc, Bangalore)
2.Kunihiko Kaneko (Tokyo)
3.Andreas Wagner (Zurich)
PRE-SCHOOL COURSES:
Dec 5 & 6: Basic biology for non-biologists: physiology of cells, gene expression and regulation, metabolism, cell-cell communication, ecology and evolution
Instructors:
1.Mukund Thattai (NCBS),
2.Supreet Saini (IITB),
3.Deepa Agashe (NCBS)
Dec 7: Basic mathematical methods for biologists: dynamical systems, network analysis, genomic data analysis
Instructors:
1.Sandeep Krishna (NCBS),
2.Nagasuma Chandra (IISc)

Basic processes in cells, numbers in biology by Mukund Thattai (Part 1) 1:26:14
Basic processes in cells, numbers in biology by Mukund Thattai (Part 2) 1:32:58
Regulation of transcription,translation,etc.,regulatory N/Ws,feedback by Supreet Saini (Part 1) 1:35:15
Regulation of transcription,translation,etc.,regulatory N/Ws,feedback by Supreet Saini (Part 2) 1:35:38
Cell - cell communication, heterogeneity and collective behaviour...by Supreet Saini (Part 1) 1:20:58
Cell - cell communication, heterogeneity and collective behaviour...by Supreet Saini (Part 2) 1:35:03
Microbial ecology and evolution by Deepa Agashe (Part 1) 1:35:15
Microbial ecology and evolution by Deepa Agashe (Part 2) 1:32:17
Dynamical systems applied to biology, in particular... by Sandeep Krishna (Part 1) 1:31:02
Dynamical systems applied to biology, in particular... by Sandeep Krishna (Part 2) 1:33:50
Network and graph analysis, genomic data analysis by Nagasuma Chandra (Part 1) 1:27:44
Network and graph analysis, genomic data analysis by Nagasuma Chandra (Part 2) 1:11:35
Welcome remarks by Rajesh Gopakumar (Director, ICTS) 15:05
Regulation of gene expression in bacteria by Gary Stormo (Part 1) 1:19:06
Quantitative methods in bacterial physiology by Matthew Scott (Part 1) 1:31:37
Modeling of metabolism and its regulation by Nathan Price (Part 1) 1:31:18
Regulation of gene expression in bacteria by Gary Stormo (Part 2) 1:39:09
Quantitative methods in bacterial physiology by Matthew Scott (Part 2) 1:24:04
Modeling of metabolism and its regulation by Nathan Price (Part 2) 1:34:16
Multi-level evolutionary dynamics by Kunihiko Kaneko 1:34:30
Regulation of gene expression in bacteria by Gary Stormo (Part 3) 1:34:09
Coordination of growth and the cell cycle by Suckjoon Jun (Part 1) 1:21:54
Modeling of metabolism and its regulation by Nathan Price (Part 3) 1:28:56
Evolution of gene expression by Yitzhak Pilpel (Part 1) 1:33:12
Quantitative methods in bacterial physiology by Matthew Scott (Part 3) 1:28:52
Coordination of growth and the cell cycle by Suckjoon Jun (Part 2) 1:29:48
Evolution of gene expression by Yitzhak Pilpel (Part 2) 1:39:58
Coordination of growth and the cell cycle by Suckjoon Jun (Part 3) 1:38:44
[private video]
Principles of metabolism by Matthias Heinemann (Part 1) 1:31:52
Energy, information and computation in cells by Pankaj Mehta (Part 1) 1:33:20
[private video]
Quantitative characterization of the molecular basis of evolution by Tom Kuhlmann (Part 1) 1:11:07
Principles of metabolism by Matthias Heinemann (Part 2) 1:44:21
Energy, information and computation in cells by Pankaj Mehta (Part 2) 1:32:17
From genome sequence to systems models of Mycobacterium tuberculosis... by Nagasuma Chandra 1:35:03
Quantitative characterization of the molecular basis of evolution by Tom Kuhlmann (Part 2) 1:34:29
Principles of metabolism by Matthias Heinemann (Part 3) 1:38:31
Energy, information and computation in cells by Pankaj Mehta (Part 3) 1:30:55
Quantitative characterization of the molecular basis of evolution by Tom Kuhlmann (Part 3) 1:46:52
Evolution of gene expression by Yitzhak Pilpel (Part 3) 1:39:14
Ramanujan: The inspirational story and a glimpse of his mathematics by Ken Ono 1:28:37
Presentations (Part 1) 1:01:26
Presentations (Part 2) 47:21
Presentations (Part 3) 1:09:35